PseudoFuN is a computational tool for studying potential functions of pseudogenes in the context of evolution and diseases, developed by the Zhang Lab of Computational Genomics and Proteomics at OSU BMI. PseudoFuN is made of (1) a comprehensive similarity network of known pseudogenes and genes, (2) GO functional annotations of the nodes, (3) as well a sequence query tool that allows the querying of sequences (e.g. novel pseudogene sequence) against the network database.

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OSUMC Blast App

License

Domain specific code licensed via CC-by-4.0

These three files contain domain specific code from the Zhang Lab of Computational Genomics and Proteomics at OSU BMI and require attribution. They are protected by the CC-by-4.0 license

An open-source version of the application is available at: https://integrativeomics.shinyapps.io/pseudofun_app/

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The rest of the code is licensed using the MIT license:

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MIT License

Copyright (c) 2018 Ohio Supercomputer Center

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

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